Index

A

ANALYZE (pkoffee.cli.PKoffeCommands attribute)

analyze() (in module pkoffee.productivity_analysis)

B

bounds (pkoffee.fit_model.Model attribute), [1]

C

check_size_match() (in module pkoffee.metrics) ColumnTypeError compute_mae() (in module pkoffee.metrics) compute_r2() (in module pkoffee.metrics) compute_rmse() (in module pkoffee.metrics)

create_comparison_plot() (in module pkoffee.visualization) CRITICAL (pkoffee.log.LogLevel attribute) CSVReadError CUPS (pkoffee.data.RequiredColumn attribute) curate() (in module pkoffee.data)

D

DEBUG (pkoffee.log.LogLevel attribute) default_models() (in module pkoffee.productivity_analysis)

dpi (pkoffee.visualization.FigureParameters attribute), [1] draw_data_violin() (in module pkoffee.visualization) draw_model_lines() (in module pkoffee.visualization)

E

ERROR (pkoffee.log.LogLevel attribute)

extract_arrays() (in module pkoffee.data)

F

figsize (pkoffee.visualization.FigureParameters attribute), [1] FigureParameters (class in pkoffee.visualization) file_format_from_path() (in module pkoffee.fit_model_io) fit_all_models() (in module pkoffee.productivity_analysis) fit_model() (in module pkoffee.fit_model)

format_model_rankings() (in module pkoffee.productivity_analysis) from_dict() (pkoffee.fit_model.Model class method) from_string() (pkoffee.log.LogLevel class method) function (pkoffee.fit_model.Model attribute), [1] FunctionIdNotFoundInMappingError FunctionNotFoundInMappingError

I

INFO (pkoffee.log.LogLevel attribute)

init_logging() (in module pkoffee.log)

J

JSON (pkoffee.fit_model_io.ModelFileFormat attribute)

L

load_csv() (in module pkoffee.data) load_models() (in module pkoffee.fit_model_io) load_models_json() (in module pkoffee.fit_model_io) load_models_toml() (in module pkoffee.fit_model_io)

log_uncaught_exceptions() (in module pkoffee.log) Logistic (class in pkoffee.parametric_function) LogLevel (class in pkoffee.log) LogLevelError

M

main() (in module pkoffee.cli) max (pkoffee.parametric_function.ParametersBounds attribute), [1] MichaelisMentenSaturation (class in pkoffee.parametric_function) min (pkoffee.parametric_function.ParametersBounds attribute), [1] MissingColumnsError MissingVisualizationDependenciesError Model (class in pkoffee.fit_model) ModelFileFormat (class in pkoffee.fit_model_io) ModelParsingError

module pkoffee.cli pkoffee.data pkoffee.fit_model pkoffee.fit_model_io pkoffee.log pkoffee.metrics pkoffee.parametric_function pkoffee.productivity_analysis pkoffee.visualization

N

name (pkoffee.fit_model.Model attribute), [1] NO (pkoffee.visualization.Show attribute)

NoModelProvidedError NOTSET (pkoffee.log.LogLevel attribute)

P

param_bounds() (pkoffee.parametric_function.Logistic class method) (pkoffee.parametric_function.MichaelisMentenSaturation class method) (pkoffee.parametric_function.ParametricFunction class method) (pkoffee.parametric_function.Peak2Model class method) (pkoffee.parametric_function.PeakModel class method) (pkoffee.parametric_function.Quadratic class method) param_guess() (pkoffee.parametric_function.Logistic class method) (pkoffee.parametric_function.MichaelisMentenSaturation class method) (pkoffee.parametric_function.ParametricFunction class method) (pkoffee.parametric_function.Peak2Model class method) (pkoffee.parametric_function.PeakModel class method) (pkoffee.parametric_function.Quadratic class method) ParametersBounds (class in pkoffee.parametric_function) ParametricFunction (class in pkoffee.parametric_function) params (pkoffee.fit_model.Model attribute), [1] Peak2Model (class in pkoffee.parametric_function) PeakModel (class in pkoffee.parametric_function) pkoffe_argparser() (in module pkoffee.cli) PKoffeArgParseFormatter (class in pkoffee.cli) PKoffeCommands (class in pkoffee.cli) pkoffee.cli module

pkoffee.data module pkoffee.fit_model module pkoffee.fit_model_io module pkoffee.log module pkoffee.metrics module pkoffee.parametric_function module pkoffee.productivity_analysis module pkoffee.visualization module pkoffee_function_id_mapping() (in module pkoffee.fit_model_io) PLOT (pkoffee.cli.PKoffeCommands attribute) plot_models() (in module pkoffee.visualization) predict() (pkoffee.fit_model.Model method) PRODUCTIVITY (pkoffee.data.RequiredColumn attribute)

Q

Quadratic (class in pkoffee.parametric_function)

R

r_squared (pkoffee.fit_model.Model attribute)

RequiredColumn (class in pkoffee.data)

S

save_models() (in module pkoffee.fit_model_io) save_models_json() (in module pkoffee.fit_model_io) save_models_toml() (in module pkoffee.fit_model_io)

Show (class in pkoffee.visualization) SizeMismatchError sort() (pkoffee.fit_model.Model class method)

T

to_dict() (pkoffee.fit_model.Model method)

TOML (pkoffee.fit_model_io.ModelFileFormat attribute)

U

UnsupportedCommandError

UnsupportedModelFormatError

V

validate() (in module pkoffee.data)

visualize() (in module pkoffee.visualization)

W

WARNING (pkoffee.log.LogLevel attribute)

Y

y_limits (pkoffee.visualization.FigureParameters attribute), [1]

YES (pkoffee.visualization.Show attribute)